![]() Listening to the ImageJ community, it is clear that: The program has been successful enough that it would greatly benefit from current open-source software best practices: a publicly accessible source code repository, a suite of unit tests with a continuous build integration system, a central repository of extensions, clear guidelines on how external developers can contribute to both those extensions and to the core program when warranted, and a development roadmap addressing feature requests and tasks from the community. In recent years a segment of the ImageJ developer community has repeatedly inquired as to ImageJ’s future. See the Architecture page for further details. SciJava Common - The core frameworks for plugins, modules and the application itself.ImageJ Legacy - Provides complete backwards compatibility with the original ImageJ.ImageJ Updater - A mechanism to update individual plugins and libraries within ImageJ2.ImageJ Ops - An extensible framework for reusable image processing algorithms.ImageJ Common - The core image data model, using ImgLib2.The following software component libraries form the core of ImageJ2: ImageJ2 is also a collection of reusable software libraries built on SciJava, using a powerful plugin framework to facilitate rapid development and painless user customization. You can change this behavior at any time by running Edit › Options › ImageJ2 and modifying the Use SCIFIO when opening files option.įor further details, see the SCIFIO page. ImageJ2 uses the SCIFIO library (SCientific Image Format Input and Output) by default for most image input tasks. Improved image I/O with the SCIFIO library Any code that works in the Script Interpreter should be usable as a code snippet.ĭevelopers can extend the capabilities of the search bar by writing Searcher plugins. The search bar finds commands, and can search the ImageJ wiki as well as the Image.sc Forum if you check those respective checkboxes.įor power users and developers, the search bar supports execution of “code snippets”-single lines of code for performing tasks-by starting the query with !. Reusable in many contexts: KNIME, CellProfiler, OMERO, headless….Plugins appear in the menu automatically without nfig files.Mix and match ImageJ and ImageJ2 data structures.Typed inputs and outputs with no dependence on AWT user interface.Write parameterized commands and scripts:.Use ImageJ2’s N-dimensional ImgLib2-based data structures (still in beta).Plugins › Debug › System Information for reporting on versions of installed plugins and libraries.Plugins › Debug › Dump Stack for debugging when things hang.More powerful Script Editor with support for several scripting languages.New and enhanced file format support via the SCIFIO library ( see below).The ImageJ Updater makes it simple to stay up to date, and to add new plugins by enabling additional Update Sites.ImageJ2 provides many new features and capabilities: The Fiji project has been built on top of ImageJ2 for quite some time, so you may already be familiar with some of ImageJ2’s features-some of which, such as the Updater and Launcher, were originally developed as part of Fiji. This allows users to keep using ImageJ in familiar ways, while providing the ability to migrate toward more powerful new features as needed. To ensure backwards compatibility, ImageJ2 has been designed to fully integrate into the existing ImageJ user interface. Its central goal is to broaden the paradigm of ImageJ beyond the limitations of the original ImageJ application, to support the next generation of multidimensional scientific imaging. ImageJ2 is a rewrite of ImageJ for multidimensional image data, with a focus on scientific imaging. See also these presentation slides about ImageJ2. Unify online resources to a central location for the ImageJ community.Maintain backwards compatibility with existing ImageJ functionality.Broaden ImageJ’s usefulness and relevance across many disciplines of the scientific community.Collaborate across organizations, fostering open development through sharing and reuse.Design the next generation of ImageJ, driven by the needs of the community.
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